PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68896.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 213aa    MW: 23159 Da    PI: 6.8791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68896.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08147173430
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                    h ++Er+RR++iN +f eL +++P +
  MLOC_68896.1 147 EHVMAERKRREKINRRFIELSTVIPGL 173
                   699**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-7140174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.064143213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-8147173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5147173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-7148180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDDSSMFIQW AMETLEQEKD AAGAGDVFPS SLLELDSSRL ELSHSAGLQN GMDMAAHRYG  60
ATDSWSSGDS GAAVVVENDG WSSNCSTNYP AASWNFTSAI PQPASIIKTT PSPSAAPSHV  120
VPELEHRSPP SRKSSGASRG TVPTVQEHVM AERKRREKIN RRFIELSTVI PGLKKVCPLS  180
PTHFSSSAQL YHSIFCTPWS TFLTKIILYS LSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646671e-32AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171135.11e-101transcription factor bHLH18-like
TrEMBLM0YFT11e-124M0YFT1_HORVV; Uncharacterized protein
STRINGMLOC_68896.21e-125(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-09bHLH family protein