PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69002.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 301aa    MW: 32384.2 Da    PI: 7.8173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69002.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174999155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  MLOC_69002.1 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 99
                  79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-114999IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1949108IPR016177DNA-binding domain
CDDcd000182.76E-1749107No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2750107IPR001471AP2/ERF domain
PROSITE profilePS5103219.84950107IPR001471AP2/ERF domain
SMARTSM003802.1E-3350113IPR001471AP2/ERF domain
PRINTSPR003678.6E-75162IPR001471AP2/ERF domain
PRINTSPR003678.6E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELHFQVQPA VLQLQDYCYY YQHQQQEAAA VQAKPTKPRG RKKGSTSHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETADAAARAY DEAARLLRGA EARTNFAPRI SPDCPLAVRI  120
RGLLHHKKLK KARLPAASAN IPGPSSTPAA PATYAPSNSN SNSNSNSNSN SMDGGACGGA  180
SSSSSSSAVS CDGAMKQGGG EVYRPDFAPV AGAEELESWM FESSFGQFPA LDGFAAVDAC  240
TLPAASPEET SASGMVEFER MKVERRISAS LYAMNGLQEY FDKVFEASAG DPLWDLSPLC  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13481061271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741060.0AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148323.11e-148ethylene-responsive transcription factor RAP2-11
TrEMBLF2ED810.0F2ED81_HORVV; Predicted protein
STRINGMLOC_69002.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-20related to AP2 11