PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69156.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 233aa    MW: 24981.9 Da    PI: 9.549
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69156.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.62.4e-3793150360
        zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                   e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ 
  MLOC_69156.1  93 EARLPCPRCRSEDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 150
                   56789***************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.5E-3195149IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2596149IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.39796150IPR003851Zinc finger, Dof-type
PROSITE patternPS01361098134IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRHLSLASE STGHTLTDMV SHSHLEMGGA AGIKLFGKVI TRQPTRQGTD GGGGGVPSKA  60
QQAPSMSSSS SSSGRGSVEQ LEEAARARAA AAEARLPCPR CRSEDTKFCY FNNYNVNQPR  120
HFCRACHRYW TAGGAIRNVP VGSGRRKNRP VLHGASTVMS ADNPLAGSAS QGMVNGLGFH  180
PDHGWSQVVP SPAYLGHGEM EQCWWLVHQY PAQGQVNGDV QLSPSSLRVN QYA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574380.0AK357438.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053I13.
GenBankAK3579680.0AK357968.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566046.22e-55dof zinc finger protein 5
SwissprotQ5JLR77e-38DOF5_ORYSJ; Dof zinc finger protein 5
TrEMBLM0YGP31e-172M0YGP3_HORVV; Uncharacterized protein
STRINGMLOC_69156.11e-173(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64952851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.14e-32Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]