PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69438.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 345aa    MW: 36733.1 Da    PI: 4.5298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69438.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-13125171353
           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                   ++GVr +k +g+W+AeIr  +     + kr +lg+f+ta+ A +a+ aa +++
  MLOC_69438.1 125 HRGVRLRK-WGKWAAEIRNpF-----SgKREWLGTFDTADLASAAYQAASRSF 171
                   79****99.**********66.....46******************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.871124181IPR001471AP2/ERF domain
SMARTSM003802.3E-10124194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17125175IPR001471AP2/ERF domain
PfamPF008475.3E-7125168IPR001471AP2/ERF domain
PRINTSPR003672.6E-7125136IPR001471AP2/ERF domain
CDDcd000183.27E-18125171No hitNo description
SuperFamilySSF541711.44E-14125174IPR016177DNA-binding domain
PRINTSPR003672.6E-7147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPLSQHQIR LRQALAKRPK TKMLAGFGVK PSTAFSKPAQ PQMLPSLPAA QPPRRRVRVL  60
YEDPDATDSD TDDEEAAAAP ASSKRCFELF LGKAPAAKVF AKPVTPAAAA AAAVCTTSSA  120
SAEAHRGVRL RKWGKWAAEI RNPFSGKREW LGTFDTADLA SAAYQAASRS FIEEKRRRRG  180
QSGAAASPAQ SATSSPASSS TPTASSSSST SAAPFAHPSP SSVLEATKLA AESISPEPTP  240
VPVMVSTTPE TAQLPDDPEF YQDLLRGLQL PDIDPMDFRA GLDALDVSEA SAYLDGEQDL  300
LLGDLADEEL ELDMDLDIGD DFLEMPGCDF GRGMDDFLQT VDFCV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742410.0AK374241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058H07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154634.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLF2EDL60.0F2EDL6_HORVV; Predicted protein
STRINGMLOC_69438.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.26e-11related to AP2 2