PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_69561.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 791aa MW: 87454.2 Da PI: 5.9805

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_69561.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	377	2.3e-115	416	785	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+ vs +d + a+ lL +++++as +gd qRla++f+++L+arla+++s++yk + s+ + +++l+a++l+ ++P+ k+sh a MLOC_69561.1 416 ETLLIHCAQSVSIDDRRSATDLLRQIRQHASATGDGDQRLAHCFANGLEARLAGNGSRIYKLHTISRFA---CTDVLKAYQLYLAACPFKKISHYFA 509 789********************************************************99999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 Nq+I++ave++++vHi+Df++ +G+QWp+L+q L +Rp+gpp+lRiT+++ p++g +e++ e+g+ L+++A++++vpf+++ +a+++e++++e+ MLOC_69561.1 510 NQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLGKRPGGPPELRITAIDTPQPGfrPAERIDEIGRYLSDYAQTFKVPFKYHG-IASQFEAVRVED 605 ********************************************************************************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal ++sa fd+lea++pr++eer +E +l+ MLOC_69561.1 606 LHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMNPHVFIHGVTNGSYNAPFFVSRFREALFHFSAAFDMLEANIPRDNEERLLIESALF 702 ********************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+ ++ ++++ + ++e++++l++gWk+r L+++S W+ MLOC_69561.1 703 SREAINVISCEGMERMERPETYKQWQVRNQRAGFKQLPLDQEIMKRAREKVKCYHKN-FIIDEDNKWLLQGWKGRILYALSTWK 785 ************************************************99966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.19	389	766	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-113	416	785	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MVMDAALYDW CGPLPAGSKL PIHPQITAED LESLLLLPSD GADAAAYLNA APAPLLPASA 60 DTASPPPPPG DASAPSPAAP DDSEVFSDIV LGYINRMLMA EDIDEKFDHY PAHPALLAAE 120 KPFLEILADQ PPCSGGSTVE SPDGSSVTTN SFNSLASCNC AAPSGGLCAM QAPPALEFPT 180 PEFPHPPHFY QDLSPESCVV EAGGAWPPCD PMEFNPLPDA LLSQSSSFAS SNGSSVAFPE 240 GFEPWLSTAD AVPHAALSDF VLQSQQAAQF SRGFEEASRF LPQESKLVID LDSLPSVWVK 300 QDNKVVEVKR EKADAQVAIH RGKKHFYGDD LDADEVRCCK HSAPVVDADH LVREMMDKVL 360 LCDGETCSRG VKELREALQH DVANHSGAAH GKGSGHGKGR GKKQVKQPKK EVVDLETLLI 420 HCAQSVSIDD RRSATDLLRQ IRQHASATGD GDQRLAHCFA NGLEARLAGN GSRIYKLHTI 480 SRFACTDVLK AYQLYLAACP FKKISHYFAN QTIMNAVEKA KKVHIVDFGV YYGFQWPCLI 540 QRLGKRPGGP PELRITAIDT PQPGFRPAER IDEIGRYLSD YAQTFKVPFK YHGIASQFEA 600 VRVEDLHIEK DEILIVNSMF RFKTLMDESV VAESPRNMVL NTIRKMNPHV FIHGVTNGSY 660 NAPFFVSRFR EALFHFSAAF DMLEANIPRD NEERLLIESA LFSREAINVI SCEGMERMER 720 PETYKQWQVR NQRAGFKQLP LDQEIMKRAR EKVKCYHKNF IIDEDNKWLL QGWKGRILYA 780 LSTWKANPQS S

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MVMDAALYDW CGPLPAGSKL PIHPQITAED LESLLLLPSD GADAAAYLNA APAPLLPASA  60
DTASPPPPPG DASAPSPAAP DDSEVFSDIV LGYINRMLMA EDIDEKFDHY PAHPALLAAE  120
KPFLEILADQ PPCSGGSTVE SPDGSSVTTN SFNSLASCNC AAPSGGLCAM QAPPALEFPT  180
PEFPHPPHFY QDLSPESCVV EAGGAWPPCD PMEFNPLPDA LLSQSSSFAS SNGSSVAFPE  240
GFEPWLSTAD AVPHAALSDF VLQSQQAAQF SRGFEEASRF LPQESKLVID LDSLPSVWVK  300
QDNKVVEVKR EKADAQVAIH RGKKHFYGDD LDADEVRCCK HSAPVVDADH LVREMMDKVL  360
LCDGETCSRG VKELREALQH DVANHSGAAH GKGSGHGKGR GKKQVKQPKK EVVDLETLLI  420
HCAQSVSIDD RRSATDLLRQ IRQHASATGD GDQRLAHCFA NGLEARLAGN GSRIYKLHTI  480
SRFACTDVLK AYQLYLAACP FKKISHYFAN QTIMNAVEKA KKVHIVDFGV YYGFQWPCLI  540
QRLGKRPGGP PELRITAIDT PQPGFRPAER IDEIGRYLSD YAQTFKVPFK YHGIASQFEA  600
VRVEDLHIEK DEILIVNSMF RFKTLMDESV VAESPRNMVL NTIRKMNPHV FIHGVTNGSY  660
NAPFFVSRFR EALFHFSAAF DMLEANIPRD NEERLLIESA LFSREAINVI SCEGMERMER  720
PETYKQWQVR NQRAGFKQLP LDQEIMKRAR EKVKCYHKNF IIDEDNKWLL QGWKGRILYA  780
LSTWKANPQS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-47	419	785	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_69561.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK377109	0.0	AK377109.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3148I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188125.1	0.0	scarecrow-like protein 9
TrEMBL	M0YI62	0.0	M0YI62_HORVV; Uncharacterized protein
STRING	MLOC_69561.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-168	SCARECROW-like 14