PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69653.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 256aa    MW: 26720 Da    PI: 9.4918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69653.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-0578100123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C + F ++  L  H++ H
  MLOC_69653.1  78 FKCNYCQRKFYTSQALGGHQNAH 100
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.37E-774105No hitNo description
Gene3DG3DSA:3.30.160.608.1E-476104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57278105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGHSSRTASM EAVKAEDEEG EVVQPANEEL SAPSLELNLV GALGLGENAA ADAIVAAGPS  60
DGKMAPAAVA GGENRRMFKC NYCQRKFYTS QALGGHQNAH KRERSIAKRV AAGRGGGPAA  120
SPYGAADHLV PHHLRYPGTW PYSAAGRPFL GRGAATAPFF GMQMQHHHMW NAAAQPSLAG  180
LARYAGAHHN PMYRPEAYGY GASSMAPMSA FPVAAPAVSG IWRADASGSG NGGARSINES  240
KKKEEAASKI DLTLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180898.11e-110zinc finger protein 4-like
TrEMBLA0A3B6H3941e-116A0A3B6H394_WHEAT; Uncharacterized protein
STRINGMLOC_69653.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.19e-17zinc finger protein 3