PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69778.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 77aa    MW: 8487.58 Da    PI: 9.9203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69778.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.69.1e-1717552259
                  EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                  r+YYrC+s+ gCp++k+vers++dp+v+ +tY+ +Hnh+
  MLOC_69778.1 17 RGYYRCSSSkGCPARKQVERSRTDPTVLLVTYSYDHNHP 55
                  99*****998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.2E-8456IPR003657WRKY domain
SuperFamilySSF1182903.01E-141557IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-161657IPR003657WRKY domain
PfamPF031062.8E-141655IPR003657WRKY domain
PROSITE profilePS5081119.2441757IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
AVGSSDSCGL PSRLVFRGYY RCSSSKGCPA RKQVERSRTD PTVLLVTYSY DHNHPWPAPK  60
AGCHPTKSSS HRLVDPK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3676435e-97AK367643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2059N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185102.14e-31probable WRKY transcription factor 65
SwissprotQ9LP562e-19WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A287LL777e-36A0A287LL77_HORVV; Uncharacterized protein
TrEMBLA0A287LL836e-36A0A287LL83_HORVV; Uncharacterized protein
STRINGMLOC_69778.24e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-22WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]