PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69778.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 99aa    MW: 10618.7 Da    PI: 9.2724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69778.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.22.2e-108099322
                  -SS-EEEEEEE--TT-SS-E CS
          WRKY  3 DgynWrKYGqKevkgsefpr 22
                  D ++WrKYGqK++kgs++pr
  MLOC_69778.3 80 DSWAWRKYGQKPIKGSPYPR 99
                  99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-96999IPR003657WRKY domain
SuperFamilySSF1182908.63E-87699IPR003657WRKY domain
PROSITE profilePS5081112.7718099IPR003657WRKY domain
PfamPF031064.7E-68099IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSDCSTGTDS PRADSVDEQP PADAESPGGG QSKRDHPSPS SPLPPPKRSR RSVEKRVVSV  60
PIAECGERAK TNGEGPPPPD SWAWRKYGQK PIKGSPYPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69778.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3676431e-165AK367643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2059N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185102.15e-61probable WRKY transcription factor 65
SwissprotQ9LP567e-19WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLM0YIV72e-62M0YIV7_HORVV; Uncharacterized protein
STRINGMLOC_69778.21e-62(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-12WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]