PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69987.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 330aa    MW: 35247.4 Da    PI: 5.1996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69987.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19141192256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t  eAa+a+++a+ +++g+
  MLOC_69987.1 141 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 192
                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32140200IPR001471AP2/ERF domain
CDDcd000181.59E-29141200No hitNo description
SuperFamilySSF541712.42E-22141200IPR016177DNA-binding domain
PfamPF008474.3E-14141191IPR001471AP2/ERF domain
SMARTSM003801.6E-36141205IPR001471AP2/ERF domain
PROSITE profilePS5103224.105141199IPR001471AP2/ERF domain
PRINTSPR003671.7E-13142153IPR001471AP2/ERF domain
PRINTSPR003671.7E-13181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEFAGEADGF ALDLIREHLL GGDGGVQATA SHDQGPFCDD GTFPVQQPMF FPQQQQEEMQ  60
GYMDLANQYL NSCPAADVPE AAFRAPEPVM IQFGGEPSPV TAPSSHLTIS VPAKGSFRWA  120
GTAAAAAPPP PAPAPVEDFR KYRGVRQRPW GKYAAEIRDP KRRGSRVWLG TYDTSVEAAR  180
AYDRAAFRMR GAKAILNFPN EVGTRGAELW APPPPPVPAS QTAGATNKRK RSHEEDPDVE  240
VTGVVINKAV KTEAPSPSSA HVSWDTPSSV SRETASSTLT SAATTPEGGL PPTLSSSGWE  300
QYWEALMGGM PLLSPLSPHP ALGFPQLTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26140204468ATERF1
3gcc_A4e-26140204468ATERF1
5wx9_A7e-261412011474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232KRKRSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9622110.0KT962211.1 Hordeum vulgare cultivar CI9831 ERF5 mRNA, complete cds.
GenBankKT9622120.0KT962212.1 Hordeum vulgare cultivar AC Metcalfe ERF5 mRNA, complete cds.
GenBankKT9622130.0KT962213.1 Hordeum vulgare cultivar Zheddar ERF5 mRNA, complete cds.
GenBankKT9622140.0KT962214.1 Hordeum vulgare cultivar CDC Copeland ERF5 mRNA, complete cds.
GenBankKT9622150.0KT962215.1 Hordeum vulgare cultivar H106371 ERF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178351.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A166NHD40.0A0A166NHD4_HORVU; ERF5
STRINGMLOC_69987.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-33ethylene responsive element binding factor 5