PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7000.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 321aa    MW: 35378.2 Da    PI: 8.2027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7000.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.52.1e-21140204258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST....T---EEEEEE-S....SSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa....gCpvkkkversa....edpkvveitYegeHnh 58 
                  dDg+ W KYGqK+++gs +pr+Y+rC+++    gCp++++v+rs+    +dp + +itY g+H++
  MLOC_7000.1 140 DDGFLWTKYGQKDIRGSGHPRHYFRCAYKldagGCPARRQVQRSEeeeeDDPYLYVITYFGDHTC 204
                  8***************************999999*********97222257899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-21130204IPR003657WRKY domain
SuperFamilySSF1182901.31E-19137204IPR003657WRKY domain
SMARTSM007748.1E-26139206IPR003657WRKY domain
PfamPF031063.5E-22140204IPR003657WRKY domain
PROSITE profilePS5081118.613140202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MASLATPSAA STALVTEMMA KGRKSAAALE ALLPLQDHAG IRELTADILR CCDRALAALH  60
DTGRKKRKSS PDGSAATQTT RPKRRYSYLA SLPPYAMHAY TRATTTRTYR DVSDWFSRTR  120
ASRGETAAAT TRVERKRNWD DGFLWTKYGQ KDIRGSGHPR HYFRCAYKLD AGGCPARRQV  180
QRSEEEEEDD PYLYVITYFG DHTCCHRGAE ANATLDHVKT HYQSLVLGFG SAGGRSPRPD  240
GDAWSGKTSR SAELAAEVAK VESTPSSDLW PSGPTEGLRS SANDVRCSSS PTSAAWDPSA  300
TADWDYFGNC SFDYLSEFFE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-16137204668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195143.11e-106probable WRKY transcription factor 62
TrEMBLM0YJN30.0M0YJN3_HORVV; Uncharacterized protein
STRINGMLOC_7000.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-15WRKY DNA-binding protein 62