PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70154.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 152aa    MW: 18083.7 Da    PI: 10.2218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70154.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-0968120348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                       W +eE  +l+ +v+++G   W+ I r+           Rt+ ++k++w++++
     MLOC_70154.1  68 HWDPEEVNRLIAGVEKYGQSKWHMITREYFpdpdqtqRARTPGDLKDKWRNLR 120
                      5*************************98877******99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.01461124IPR017930Myb domain
SuperFamilySSF466892.02E-1363135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-1263122IPR009057Homeodomain-like
SMARTSM007172.6E-765122IPR001005SANT/Myb domain
CDDcd116609.00E-1567121No hitNo description
PfamPF139211.7E-869122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLPERELDEL IGHIPEIDWW CKLPRRGPRK RRIPLCMDRG WFLGNHFGDN SCPRDAPSGS  60
DGRRPTRHWD PEEVNRLIAG VEKYGQSKWH MITREYFPDP DQTQRARTPG DLKDKWRNLR  120
KPCQGDVQTR CYNPLKSRQI KRIKKILGIR DE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328PRRGPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0YK671e-107M0YK67_HORVV; Uncharacterized protein
STRINGMLOC_70154.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.23e-10TRF-like 3