PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70258.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 224aa    MW: 25245.9 Da    PI: 9.013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70258.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-134388555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  h + Er+RR+++N++f+ Lr+llP++      K +K ++L+kA  Y+k L+
  MLOC_70258.2 43 HMMSERKRREKLNDSFHALRSLLPPC-----SKKDKTTVLTKAAGYLKTLE 88
                  7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0853887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1840106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-114388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1843105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-124392No hitNo description
SMARTSM003532.7E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTASCCRRRP RRHSRRSDHS PRTAAAPQDP TRAASNNTGQ LYHMMSERKR REKLNDSFHA  60
LRSLLPPCSK KDKTTVLTKA AGYLKTLEAQ VSDLEEKNSK LEKHIPSSDS EEDVPHQQRR  120
QRAKVQITKA ASSDEVVNLT VMVMVECDVV ELVLRILECL RWMEQVSVMS VDADTYSPQV  180
LLKAIASIKL RIMDDDWNQA LFHEAMTKAV NDATASPPPL VPTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651ERKRRE
24752RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70258.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686840.0AK368684.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.11e-122putative transcription factor bHLH041
TrEMBLA0A446NG961e-142A0A446NG96_TRITD; Uncharacterized protein
STRINGMLOC_70258.11e-140(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-28bHLH family protein