PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70302.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 168aa    MW: 18662.4 Da    PI: 7.363
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70302.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.7e-102584463
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                   +  +rk +NR++ArrsR +++++   L+ ++++Le  N+a++ +   ++++++ +++++
  MLOC_70302.1 25 ERQRKRKTSNRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTALMQQQCSLVQQQN 84
                  4567999**************************************999999999877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-92283No hitNo description
SMARTSM003382.7E-82286IPR004827Basic-leucine zipper domain
PfamPF001703.5E-72484IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9562487IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-72681No hitNo description
CDDcd147029.07E-102773No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEMVPPAAAA AAAPPRRGGA ITEEERQRKR KTSNRLSARR SRVKRQQREG SLTARAAQLE  60
IDNEAMRVTT ALMQQQCSLV QQQNRVLSAD ARYLYSLLEQ QNSQLRVLGE LAGVPMDVQE  120
IPVHLTQLYG GLQSPLAPPL SLPPEIQMLL QPDQLDDIMD DAGSLPWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631QRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508080.0AK250808.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164955.12e-79ocs element-binding factor 1-like
TrEMBLM0YKQ61e-115M0YKQ6_HORVV; Uncharacterized protein
STRINGMLOC_70302.11e-116(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125042837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.18e-11basic region/leucine zipper motif 53