PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70350.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 159aa    MW: 18337.8 Da    PI: 9.2787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70350.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2065118456
                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  MLOC_70350.1  65 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118
                   458**************9899********************************9 PP
2HD-ZIP_I/II126.31.4e-4063154191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++++ +L++++
  MLOC_70350.1  63 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDFAALRASYDALHSRVESLKHDKLALAAQV 154
                   69******************999*****************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1953122IPR009057Homeodomain-like
PROSITE profilePS5007117.84859120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2059125IPR009057Homeodomain-like
SMARTSM003894.7E-1962124IPR001356Homeobox domain
PfamPF000461.2E-1764118IPR001356Homeobox domain
CDDcd000861.68E-1664121No hitNo description
PRINTSPR000313.1E-791100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000313.1E-7100116IPR000047Helix-turn-helix motif
PfamPF021837.6E-13120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDYHHHHHQQ QQQFLMPPPA SLPAAQQQQQ QQQQMCAPMM DMEMEEQVCF VGRGGGGGGR  60
GAERKRRFTE EQIRSLESMF HAHHAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK  120
QLEQDFAALR ASYDALHSRV ESLKHDKLAL AAQVPAPTP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635510.0AK363551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200397.13e-62homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK06e-52HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ56e-52HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A287IYM81e-109A0A287IYM8_HORVV; Uncharacterized protein
STRINGMLOC_70350.21e-106(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-34homeobox 7