PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70591.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 118aa    MW: 12298.6 Da    PI: 6.7776
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70591.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.22e-281263357
   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  + +Y+eCl+NhAa+lG++a DGC+E++p+   +g++aal CaACgCHRnFHR+  
  MLOC_70591.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPD---DGQPAALLCAACGCHRNFHRKAF 63
                  678*************************8...7899****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-231462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-201561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.1641562IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-221561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEQMQHQQER EREVYRECLR NHAAKLGTYA SDGCCEYTPD DGQPAALLCA ACGCHRNFHR  60
KAFLDGTASP GQAASQHAPL MLPSPGAPPG YMHHHLAMAG PSGVATGGGD GGGSHSGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101113SGVATGGGDGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915327e-51AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149597e-51AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126117e-51CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankEU9718757e-51EU971875.1 Zea mays clone 371882 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.19e-67zinc-finger homeodomain protein 11-like
SwissprotA2XLF46e-36ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV56e-36ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A287N4015e-80A0A287N401_HORVV; Uncharacterized protein
STRINGMLOC_70591.15e-81(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-21homeobox protein 22