PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70640.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 219aa    MW: 23552.4 Da    PI: 8.001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70640.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-142067355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++Lq
  MLOC_70640.1 20 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVRELQ 67
                  68*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6181766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-142074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-122067No hitNo description
PfamPF000105.9E-122067IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-152069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-132372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATDGECSTP AAPRKGATGR SHSEAERKRR QRINAHLATL RTLVPSASRM DKAALLGEVV  60
RHVRELQGRA NDATEGVAGV VPGETDEVGV EEEGDYLLNA APTHDDDDDD ARWRRRVRAW  120
VCCADRPGLM SDLGRAVRSV GSARPVRAEI ATVGGRTRSV LELDHVCHGA EPASDRAVAL  180
STLRAALRTV LLNREELLAA AAAADGYKRP RLSPVQQLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197761.11e-108transcription factor AIG1-like
TrEMBLA0A3B6CFP61e-118A0A3B6CFP6_WHEAT; Uncharacterized protein
TrEMBLA0A446MQN81e-118A0A446MQN8_TRITD; Uncharacterized protein
STRINGMLOC_70640.11e-153(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.17e-15bHLH family protein