PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70653.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

YABBY

Protein Properties

Length: 296aa MW: 31434.5 Da PI: 8.5078

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70653.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	81.2	3.2e-25	40	98	4	62
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62 seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+v+++ +++ MLOC_70653.1 40 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVDMRGLLFPTTTPTT 98 5689******************************************9988765555444 PP
2	YABBY	131.9	7.9e-41	192	256	107	170
YABBY 107 eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl MLOC_70653.1 192 EPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 256 5678887769*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.5E-64	42	256	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	194	249	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-4	205	248	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSSSSSSGAS AAFTPVSQQQ QMAPENLSSE LQPPAPMQPE APSEQLCYVH CHFCDTVLVV 60 SVPSSSLFKT VTVRCGHCSS LLTVDMRGLL FPTTTPTTAA ESAASAVTTT TSPPPAAAAH 120 HGQFHYPSSL ILAPSNPPRH SLLDEISSAN PSLQLLEQHG LGGLIAAAGS RNAAAPAQLP 180 PPPVASGKGG KEPSPRTNPV VNRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS 240 AAAKNWAHFP HIHFGLMPDH QGLRKTNLIP QDHQRKDGHG LLKEGLYAAN MGVAPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	0.0	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	1e-177	protein YABBY 3-like
Swissprot	Q8L556	1e-105	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	M0YLZ0	0.0	M0YLZ0_HORVV; Uncharacterized protein
STRING	MLOC_70653.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-46	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]