PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70653.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

YABBY

Protein Properties

Length: 220aa MW: 22916.9 Da PI: 8.2432

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70653.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	82.2	1.5e-25	40	98	4	62
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62 seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+v+++ +++ MLOC_70653.2 40 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVDMRGLLFPTTTPTT 98 5689******************************************9988765555544 PP
2	YABBY	39.3	2.3e-12	192	220	107	134
YABBY 107 eevprvpp.virPPekrqrvPsaynrfik 134 e +pr+ p v+rPPekrqrvPsaynrfik MLOC_70653.2 192 EPSPRTNPvVNRPPEKRQRVPSAYNRFIK 220 5678887779******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-35	42	220	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSSSSSSGAS AAFTPVSQQQ QMAPENLSSE LQPPAPMQPE APSEQLCYVH CHFCDTVLVV 60 SVPSSSLFKT VTVRCGHCSS LLTVDMRGLL FPTTTPTTAA ESAASAVTTT TSPPPAAAAH 120 HGQFHYPSSL ILAPSNPPRH SLLDEISSAN PSLQLLEQHG LGGLIAAAGS RNAAAPAQLP 180 PPPVASGKGG KEPSPRTNPV VNRPPEKRQR VPSAYNRFIK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70653.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	0.0	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	1e-115	protein YABBY 3-like
Swissprot	Q8L556	3e-52	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	M0YLZ1	1e-155	M0YLZ1_HORVV; Uncharacterized protein
STRING	MLOC_70653.1	1e-155	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	4e-14	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]