PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70659.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 155aa    MW: 17094.1 Da    PI: 4.6006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70659.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-083478244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+W++ E +l+ +a ++   +   +W+++a+ ++ g+t  ++  ++
     MLOC_70659.1 34 GAWSPAENKLFEEALARVDCDapdRWERVASLLP-GKTVADVMTHY 78
                     79*****************99*************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2372882IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-43180IPR009057Homeodomain-like
SMARTSM007172.2E-53284IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-103489IPR009057Homeodomain-like
PfamPF002495.7E-73478IPR001005SANT/Myb domain
CDDcd001674.00E-63578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MMKQESWMEV LPVPPAPYFA GQAGGWFLQD QRGGAWSPAE NKLFEEALAR VDCDAPDRWE  60
RVASLLPGKT VADVMTHYDD LENDVCFIEA GLVPFPHYNA NAGSPASGFT LDWDGGGDLA  120
FKRSCYMVGG NGGKRGRGSE QERKKGVPWT EEEHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1733104879RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659530.0AK365953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154949.13e-97transcription factor DIVARICATA-like
SwissprotQ8S9H76e-40DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLF2DPY51e-112F2DPY5_HORVV; Predicted protein
STRINGMLOC_70659.21e-112(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-38MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]