PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70676.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 186aa    MW: 21114.1 Da    PI: 9.2332
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70676.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY236.36.9e-7361615170
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q  l++++h         +e+ k ++ +++ n+  + ++s+++  ++
  MLOC_70676.1   6 APPEHVCYVHCNFCNTILAVSVPSNSMLNMVTVRCGHCTSLLSVNLRGLIQsPLPVQDH--------SQENFKAQNISFHGNYPDYGTSSKYRMPMM 94 
                   679*******************************************9987515888887........788999999999999999999888887777 PP

         YABBY 101 lsened.eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +s+++d e++ +    +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  MLOC_70676.1  95 FSTKSDqEHMLH----MRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
                   766555055555....8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-727161IPR006780YABBY protein
SuperFamilySSF470959.69E-999155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.6E-5106155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNMVTVRC GHCTSLLSVN LRGLIQSPLP  60
VQDHSQENFK AQNISFHGNY PDYGTSSKYR MPMMFSTKSD QEHMLHMRPP EKRQRVPSAY  120
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSNESSKKL DETIATPIPQ  180
KVQGLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582210.0AK358221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155668.11e-132protein YABBY 2-like isoform X2
SwissprotQ10FZ71e-110YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0YM091e-138M0YM09_HORVV; Uncharacterized protein
STRINGMLOC_70676.21e-135(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-65YABBY family protein