PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70676.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 200aa    MW: 22762.1 Da    PI: 9.4974
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70676.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.42.1e-7161625170
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q  l++++h         +e+ k ++ +++ n+  + ++s+++  ++
  MLOC_70676.2   6 APPEHVCYVHCNFCNTILAVSVPSNSMLNMVTVRCGHCTSLLSVNLRGLIQsPLPVQDH--------SQENFKAQNISFHGNYPDYGTSSKYRMPMM 94 
                   679*******************************************9987515888887........788899999999999999998888877766 PP

         YABBY 101 l.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   + +++++e++ ++ p    PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  MLOC_70676.2  95 FsTKSDQEHMLHMRP---APEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 162
                   634556667777655...6**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-707162IPR006780YABBY protein
SuperFamilySSF470956.55E-8108156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-5111156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNMVTVRC GHCTSLLSVN LRGLIQSPLP  60
VQDHSQENFK AQNISFHGNY PDYGTSSKYR MPMMFSTKSD QEHMLHMRPA PEKRQRVPSA  120
YNRFIKEEIR RIKANNPDIS HREAFSTAAK NWAHFPNIHF GLGSNESSKK LDETIATPIP  180
QKVQVMKKVM MAERSFGWVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70676.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582210.0AK358221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155667.11e-131protein YABBY 2-like isoform X1
SwissprotQ10FZ71e-107YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A287S9141e-148A0A287S914_HORVV; Uncharacterized protein
STRINGMLOC_70676.21e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-63YABBY family protein