PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70676.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 122aa    MW: 13859 Da    PI: 8.7637
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70676.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY100.73.1e-3161045109
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+      l++++h         +e+ k ++ +++ n+  + ++s+++  ++
  MLOC_70676.5   6 APPEHVCYVHCNFCNTILAVSVPSNSMLNMVTVRCGHCTSLLSVNLRGLIqSPLPVQDHS--------QENFKAQNISFHGNYPDYGTSSKYRMPMM 94 
                   679*******************************************99872468999984........55555555555555555555555544444 PP

         YABBY 101 lsen.edeev 109
                   +s++ ++e++
  MLOC_70676.5  95 FSTKsDQEHM 104
                   4333033334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-297100IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNMVTVRC GHCTSLLSVN LRGLIQSPLP  60
VQDHSQENFK AQNISFHGNY PDYGTSSKYR MPMMFSTKSD QEHMLHMRLG TFPKHSFRTR  120
LQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70676.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758850.0AK375885.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3108K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155667.12e-71protein YABBY 2-like isoform X1
RefseqXP_020155668.12e-71protein YABBY 2-like isoform X2
SwissprotQ10FZ72e-52YAB2_ORYSJ; Protein YABBY 2
TrEMBLF2EIA81e-86F2EIA8_HORVV; Predicted protein
STRINGMLOC_70676.23e-76(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-23YABBY family protein