PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70692.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 242aa    MW: 26826.3 Da    PI: 7.0477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70692.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1784134255
           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr ++ +g+++AeIrdp     k +r++lg+++ a eAa+a+++a+ +l+g
  MLOC_70692.1  84 RYRGVRLRP-WGKFAAEIRDP---ArKGARVWLGTYDDAVEAARAYDRAAFRLRG 134
                   7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3084143IPR001471AP2/ERF domain
CDDcd000182.04E-2784143No hitNo description
PfamPF008471.4E-1184134IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2284143IPR016177DNA-binding domain
SMARTSM003802.1E-3584148IPR001471AP2/ERF domain
PROSITE profilePS5103223.69684142IPR001471AP2/ERF domain
PRINTSPR003673.0E-138596IPR001471AP2/ERF domain
PRINTSPR003673.0E-13124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAFTHRHLDL IRAHLLDDLH ADALASSSGD SDSSASSPPG RRRPALSLSL PSKPATTMVL  60
ERQLQQASCG YVEGQEEEDD DFRRYRGVRL RPWGKFAAEI RDPARKGARV WLGTYDDAVE  120
AARAYDRAAF RLRGSKAILN FPNEVGTQSI QWVPAAPLAA AMHTGGKRMR PAQEEERLRV  180
VKKEKLQLMK DEEEESAIAA NCSAAARDAD FWEELKVICS LPPLSPLSPY PLFAFPQLSA  240
VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2783147468ATERF1
3gcc_A7e-2783147468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70692.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612870.0AK361287.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136O18.
GenBankAK3659920.0AK365992.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172805.11e-118ethylene-responsive transcription factor 5-like
TrEMBLM0YM291e-176M0YM29_HORVV; Uncharacterized protein
STRINGMLOC_70692.11e-177(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.16e-20ethylene responsive element binding factor 6