PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70754.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 659aa    MW: 69796.4 Da    PI: 6.4374
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70754.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14272331155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++gr++A+++d  +   g  ++ k+++lg ++ +++Aa+a++ a++k++g
  MLOC_70754.1 272 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgKQVYLGGYDKEDKAARAYDLAALKYWG 331
                   57*******************666664478446**********99*************98 PP
2AP251.52.5e-16374425155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  MLOC_70754.1 374 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 425
                   89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-16272341IPR016177DNA-binding domain
PfamPF008472.6E-11272331IPR001471AP2/ERF domain
CDDcd000181.47E-17272341No hitNo description
Gene3DG3DSA:3.30.730.101.6E-13273339IPR001471AP2/ERF domain
SMARTSM003804.3E-27273345IPR001471AP2/ERF domain
PROSITE profilePS5103218.202273339IPR001471AP2/ERF domain
PRINTSPR003673.5E-6274285IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18374435IPR016177DNA-binding domain
CDDcd000183.85E-22374435No hitNo description
PfamPF008474.7E-10374425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18375434IPR001471AP2/ERF domain
SMARTSM003803.7E-31375439IPR001471AP2/ERF domain
PROSITE profilePS5103219.493375433IPR001471AP2/ERF domain
PRINTSPR003673.5E-6415435IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASANNWLGF SLSGQGNHPQ PHQNGSPAAA AIDVSGAGDF YGLQAQTAPD AHLGMSGLRA  60
DANYGVMDAF NGGNQETQDW AMRGLDYHGG SSELSMLVGS SGGRMTVDDG EAPKLEDFLG  120
GNSFSDVQDH AGSYLFSSGS AMGSGAAAGS HGVQGRGGST IELSMIKTWL RNDNNQAQHD  180
QEMSADASAT SYACSGAPGS TGNGVGVANS RGQGLALSMS MGSNSHPQMP VVPAAVGTES  240
TSSENKRVDS PSAGTADAVQ RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  300
TRKGKQVYLG GYDKEDKAAR AYDLAALKYW GTTTTTNIPI STYEKEIEEM KHMTRQEYIA  360
YLRRNSSGFS RGASKYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFTTEE EAAEAYDIAA  420
IKFRGLNAVT NFEMSRYDVK SILEGSTLPV GGAARRLKEA AELAEAGVWR AEDGSIVSHL  480
QADAMAGYHH GWPTSIAFGS HQQQQSAAQL ALHYPYGVGG QARGWCKPEQ DAVIEAAHGG  540
QDLQELHLGS GGSTHNFFQP ASRTAVYGNG GGGAWYQGLG GNAYMMPVGT VVDADQGHSG  600
STATTEEGRL VGYGAEAGVD PYAAMRRAYE LSQGSSSVSV AKVADGYSNN WSSPFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640300.0AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196244.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-135BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM0YMA10.0M0YMA1_HORVV; Uncharacterized protein
STRINGMLOC_70754.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein