PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70809.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 269aa    MW: 28549.5 Da    PI: 10.1437
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70809.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.4e-18105138134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  MLOC_70809.2 105 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKVR 138
                   *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.57E-1397140No hitNo description
SMARTSM004016.2E-1999150IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268103135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14103137IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.37E-14104139No hitNo description
PROSITE patternPS003440105130IPR000679Zinc finger, GATA-type
PfamPF003201.5E-15105138IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMMGGGSADV FATCSPFGPT IQSIGSDMIQ RSSYNSYDFE ATHASDGSTS QWASAKPPVK  60
MRIMRKAPTN DPQGGMVRKP RRRAQAHQAD ESQQLQHAMG VIRVCSDCNT TKTPLWRSGP  120
CGPKSLCNAC GIRQRKVRRA MAAAAATGAN GGVASASSGG VASGGVQTSE ASQAVKATKK  180
EKRAADLDRS LPFKKRCKMV DHPTVTSTKV VAVDATPKHQ DHVVSEDVAT VERLSKADPP  240
AAFTHVFVRD EITDAAMLLM TLSCGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70809.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607600.0AK360760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158916.11e-163putative GATA transcription factor 22
SwissprotQ6YW488e-88CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLM0YMG50.0M0YMG5_HORVV; Uncharacterized protein
STRINGMLOC_70809.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]