PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70931.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 243aa    MW: 25134 Da    PI: 4.1425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70931.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-163179355
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr ++ +g Wv+eIr p   g+++r++lg++ tae Aa+a++aa ++l+g
  MLOC_70931.1 31 YKGVRMRS-WGAWVSEIRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 79
                  9****998.**********8...557************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-283095IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-163090IPR016177DNA-binding domain
PROSITE profilePS5103220.7323089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-263089IPR001471AP2/ERF domain
PRINTSPR003674.3E-83142IPR001471AP2/ERF domain
PfamPF008471.1E-93179IPR001471AP2/ERF domain
CDDcd000184.41E-143190No hitNo description
PRINTSPR003674.3E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKTAAAGSN GNGVAVKQQQ QQQLGGKMRT YKGVRMRSWG AWVSEIRAPG QKTRIWLGSH  60
STAEAAARAY DAALLCLKGG AAAADLNFPV RFPFDLPAAA MSPKSIQRVA AAAAAAGAGA  120
SVVDFACADD SASADAVDFA GADDAITPDY CSSSSNASPV SSPETASSGG AADLDGVDLL  180
GYGYSQCSLA EIEAFFQSPK CMEYAMMDPC SAFFAPAPTA MAMEDECSWE EEGDIALWSF  240
SMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-112492875Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70931.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708700.0AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17.
GenBankAK3761000.0AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156807.11e-125ethylene-responsive transcription factor ERF014-like
TrEMBLF2E3Z61e-174F2E3Z6_HORVV; Predicted protein
STRINGMLOC_70931.11e-175(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.15e-16ERF family protein