PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7126.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 134aa    MW: 14507 Da    PI: 4.4986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7126.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY223.2e-072313059
                 TT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59
                 +gC+++k vers   p v++itY  eH h+
  MLOC_7126.1  2 KGCMARKLVERSPAKPGVLVITYMAEHCHP 31
                 68**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.232133IPR003657WRKY domain
SuperFamilySSF1182901.12E-6233IPR003657WRKY domain
PfamPF031068.8E-5231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-6233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKGCMARKLV ERSPAKPGVL VITYMAEHCH PVPTQINALA GTTRHKSTPA EDHVTTTTTS  60
PKRHGNAHEP VRCEDESNET SSMAVDGTTE DAAVDDGSDF WPTELDLDEL LAPVDGDLDH  120
VFDEDGALGR RLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685130.0AK368513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174842.11e-80WRKY transcription factor 22-like
TrEMBLA0A287L4P51e-91A0A287L4P5_HORVV; Uncharacterized protein
TrEMBLF2DX951e-91F2DX95_HORVV; Predicted protein
TrEMBLM0YNS51e-93M0YNS5_HORVV; Uncharacterized protein
STRINGMLOC_7126.12e-94(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-15WRKY DNA-binding protein 27