PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71305.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 146aa MW: 16140.3 Da PI: 5.577

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71305.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	7e-13	23	102	1	86
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f v+ + +v k +l++p +f ++ +t ++ +g sW + + +++ + l++GW +F+ +n+L++gD +vF+l + MLOC_71305.1 23 FTVVMCKTHVQKPYLLIIPTHFQRRLPAR----RTAVVLRCRGSSWIMSY--SGHTKLKNLAAGWADFAIDNRLQVGDGCVFELLS 102 6778899999999*******9887533....47899999*****..88888888*********************653 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-17	17	121	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-17	18	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.39E-15	21	121	No hit	No description
Pfam	PF02362	2.1E-10	23	102	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.97	23	123	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MVLQQGAGED DETTPLSGDR PFFTVVMCKT HVQKPYLLII PTHFQRRLPA RRTAVVLRCR 60 GSSWIMSYSG HTKLKNLAAG WADFAIDNRL QVGDGCVFEL LSGDARDGGE GEVVLEVQVL 120 RGHLPEPEDL TTKGESADEP MANYHC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71305.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184539.1	3e-76	B3 domain-containing protein Os06g0112300-like
Swissprot	Q9LHY9	2e-38	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	M0YNY9	1e-105	M0YNY9_HORVV; Uncharacterized protein
STRING	MLOC_71305.1	1e-106	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	9e-08	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]