PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71395.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 244aa    MW: 27536.3 Da    PI: 7.6112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71395.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16141231199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f k +++s+v +  +l lp +f++++  k  ++ t+tl de+ +++e k+    ++++  l++GW +F+ ++ +++gD+ vF+l++ ++f  +v+++
  MLOC_71395.2 141 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPTTF--KVHII 229
                   8999********************99533..4459***************..555555..9***********************986777..99999 PP

                   -S CS
            B3  98 rk 99 
                   r+
  MLOC_71395.2 230 RA 231
                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-19132232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-22134231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-25139230No hitNo description
SMARTSM010192.9E-16141232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406141232IPR003340B3 DNA binding domain
PfamPF023624.9E-15141231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAVEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT CAPKTPSPMK HKRRRIIYAA  60
TPVPSPPRRS RRLAHLPEVK YADACAEVGE ESERVGRWSP RRRSGSIYLA AGGPISMKAR  120
MEAASKAEEL ESQLDPEFPS FMKRMLHSHV VRGFWLGLPS HFCDTYLPKN DCTITLVDEK  180
DEEFESKYLA YKKGLSGGWA GFALDHVIRD GDSTVFQLIK PTTFKVHIIR ATVGDDDDEE  240
EEAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71395.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498040.0AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149937.11e-167B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-124Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A446SEX41e-170A0A446SEX4_TRITD; Uncharacterized protein
STRINGMLOC_71395.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]