PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71599.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 197aa    MW: 21921.4 Da    PI: 5.3635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71599.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.5e-1484137155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV+++k + +W A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  MLOC_71599.1  84 SSYRGVTRRK-DDKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIQLRG 137
                   67*****999.9******99953323..36**********99************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.494149IPR001471AP2/ERF domain
SMARTSM003808.4E-4855IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-71149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-81249IPR001471AP2/ERF domain
PfamPF008476.6E-1084137IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1784147IPR016177DNA-binding domain
CDDcd000181.97E-2184147No hitNo description
PROSITE profilePS5103217.66285145IPR001471AP2/ERF domain
SMARTSM003802.4E-2585151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1885146IPR001471AP2/ERF domain
PRINTSPR003672.0E-78697IPR001471AP2/ERF domain
PRINTSPR003672.0E-7127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGSVSTFGCH CGSSVYLGSY VTEENAARAH DLAALKYWGI SQPTKLNFNI SDYVKEIEIM  60
KSMNQDEFVA YIRRQSSCFS RGTSSYRGVT RRKDDKWQAR IGRIGESRDT KDIYLGTFET  120
EVEAAEAYDL AAIQLRGVHA VTNFDVSNYS EEGLKKLEGS SVVVNLEDQS EVTKLAVTNF  180
DISKHCEDGL KKLDGAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71599.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498560.0AK249856.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf50e04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150541.11e-128AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE18e-51AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0YQ261e-144M0YQ26_HORVV; Uncharacterized protein
STRINGTraes_7BL_0712EF0CA.21e-140(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-53AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]