PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71642.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 136aa MW: 14945.7 Da PI: 10.6165

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71642.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.2	1.5e-07	72	114	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+aeN L++e+e+l+ +++l +e+ MLOC_71642.4 72 RSRKKMRLPEVKQMVLSLSAENAVLRQEMESLQMACKALSKEN 114 99*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-5	70	111	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MCQLPLLSFF PLVVGWFHSR FLDSLFLPAA SRKLTTDLAI VLLLPLLQVG SAGGARRPLI 60 MPAPPPRAAG QRSRKKMRLP EVKQMVLSLS AENAVLRQEM ESLQMACKAL SKENGTLEVS 120 ATHAHYYTNL NFSVAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	RSRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71642.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368410	1e-112	AK368410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2073D08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196993.1	3e-33	uncharacterized protein LOC109782791
TrEMBL	A0A287XVL0	5e-43	A0A287XVL0_HORVV; Uncharacterized protein
TrEMBL	A0A287XVM5	6e-45	A0A287XVM5_HORVV; Uncharacterized protein
TrEMBL	A0A287XVS1	4e-45	A0A287XVS1_HORVV; Uncharacterized protein
STRING	MLOC_71642.4	1e-94	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51