PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71829.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 69aa MW: 8196.44 Da PI: 11.1549

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71829.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.4	1.1e-08	3	69	2	62
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgC 62 Y+ YA++ GF vr k+s+ +ge +++ +v + g + ++k + err+++++rt+C MLOC_71829.1 3 HYKMYARQKGFGVRYCFRKRSEASGELIRASLVYHRAGLKIKRKVDtqnpqpIAPERRRNTTERTNC 69 7***********************************999999887888887889999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-6	3	69	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
EKHYKMYARQ KGFGVRYCFR KRSEASGELI RASLVYHRAG LKIKRKVDTQ NPQPIAPERR 60 RNTTERTNC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71829.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239385.1	9e-18	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A287FMN9	2e-41	A0A287FMN9_HORVV; Uncharacterized protein
TrEMBL	A0A287KSL3	1e-41	A0A287KSL3_HORVV; Uncharacterized protein
TrEMBL	A0A287QAA0	9e-42	A0A287QAA0_HORVV; Uncharacterized protein
STRING	MLOC_71829.1	1e-44	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43