PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71897.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 181aa MW: 19744 Da PI: 8.7561

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71897.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.8	4.5e-28	119	180	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ g+++pr+YYrCt++ gC+++k+v+r++edp +++++Y+g+H+++ MLOC_71897.2 119 VDDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCTATKQVQRADEDPVLFDVVYHGQHTCR 180 59*************************98889************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-28	114	180	IPR003657	WRKY domain
PROSITE profile	PS50811	22.251	114	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-25	117	180	IPR003657	WRKY domain
SMART	SM00774	3.4E-39	119	181	IPR003657	WRKY domain
Pfam	PF03106	5.1E-27	120	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MESVEGNGTG RGNLQLVVSE LCRIQELVRQ LELHLHAPDT SVDLCRALTA QIFALTDRSI 60 GFVAAAHSSD APTTPSSTSS SLSGVSDQPF RTNTKKRKAT ARWTSQVRVS AAGGAEGPVD 120 DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QGCTATKQVQ RADEDPVLFD VVYHGQHTCR 180 P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-24	119	180	8	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71897.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361795	0.0	AK361795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1149F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187901.1	1e-115	probable WRKY transcription factor 41
Swissprot	Q8H0Y8	7e-40	WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBL	B2KJ72	1e-130	B2KJ72_HORVV; WRKY transcription factor 30 (Fragment)
TrEMBL	F2DD28	1e-129	F2DD28_HORVV; Predicted protein (Fragment)
STRING	MLOC_71897.2	1e-133	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1086	38	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	6e-40	WRKY family protein

Publications ? help Back to Top
Duan S, et al. Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana. Plant Sci., 2018. 268: p. 47-53 [PMID:29362083]