PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72117.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 344aa    MW: 37519.3 Da    PI: 10.8839
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72117.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.16.4e-795034480374
          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeel 172
                   + +l+++++P+++++  +aN aI+eav+g+++vH +Dfdi+ + Q + L+q La+R+ +  sl++T+v +p+s      + +l  +gerL+k+Ae+ 
  MLOC_72117.2  50 SCSLLHDITPCFRLALDAANIAIVEAVAGHRAVHLVDFDINAP-QHAILIQRLADRRVPGTSLQVTAVTDPTSPftqsLTATLPGVGERLKKLAERA 145
                   55789***********************************987.99************************9988777667788899*********** PP

          GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                   g++ +f++ v+ r +++e ++L ++pgEalaVnl+++l +++desvs +++rde+L+ v+ l P++v++veqe++ n++++++rf++a+ +y a++d
  MLOC_72117.2 146 GIEYSFRI-VSCRAAEIEASKLGCEPGEALAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQIVTLVEQELNSNTAPLATRFSDACLHYGAILD 241
                   *******9.7999************************************************************************************ PP

          GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                   sl+++++res +r+  E++ +++   n+v  ega+r er+e ++kWr+r+++aGF+pv+l   +a+q+ + +   +  g  v+ e+g l lgWk+r 
  MLOC_72117.2 242 SLDSTVSRESADRARAEEA-VANMSANAVGREGADRLERCEVFGKWRARFGMAGFRPVALAAGIADQVMARVGAPP-PGLVVKPENGVLRLGWKGRV 336
                   *******************.777889**********************************************9999.9******************* PP

          GRAS 367 LvsvSaWr 374
                   ++++SaWr
  MLOC_72117.2 337 VTVASAWR 344
                   *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.4951325IPR005202Transcription factor GRAS
PfamPF035142.2E-7650344IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MCIGRRRSCR PLRMRSRRRR LRRMLSRWGG SRLHLRLGAN CPSCRTWRSS CSLLHDITPC  60
FRLALDAANI AIVEAVAGHR AVHLVDFDIN APQHAILIQR LADRRVPGTS LQVTAVTDPT  120
SPFTQSLTAT LPGVGERLKK LAERAGIEYS FRIVSCRAAE IEASKLGCEP GEALAVNLAF  180
ALSHVPDESV SPANPRDELL RRVRALGPQI VTLVEQELNS NTAPLATRFS DACLHYGAIL  240
DSLDSTVSRE SADRARAEEA VANMSANAVG REGADRLERC EVFGKWRARF GMAGFRPVAL  300
AAGIADQVMA RVGAPPPGLV VKPENGVLRL GWKGRVVTVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-325434483375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419RRRSCRPLRMRSRRRR
2520RRSCRPLRMRSRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72117.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7291720.0KP729172.1 Stipa purpurea microsatellite ZH29 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196221.10.0scarecrow-like protein 8
TrEMBLA0A3B6CAH40.0A0A3B6CAH4_WHEAT; Uncharacterized protein
TrEMBLA0A446MK690.0A0A446MK69_TRITD; Uncharacterized protein
STRINGMLOC_72117.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-77SCARECROW-like 8