PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72262.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 247aa    MW: 26864.4 Da    PI: 5.381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72262.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-12452148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd+l  + + ++G g +W + a+t+g+ R++ +c+ rw++yl
     MLOC_72262.2  4 KGKWSREEDDLMRRHIVKYGVGrSWQALAETLGLQRCGRSCRARWLNYL 52
                     79******************999************************97 PP
2Myb_DNA-binding322.9e-1059100245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      g++T+ E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w+
     MLOC_72262.2  59 GNFTPAEESIICEMYSKRGSC-WSVIAAQLP-GRTDLAVKNYWN 100
                      89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.898156IPR017930Myb domain
SMARTSM007171.8E-8354IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-24399IPR009057Homeodomain-like
PfamPF002491.2E-10452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-20559IPR009057Homeodomain-like
CDDcd001673.77E-8652No hitNo description
PROSITE profilePS5129414.31757107IPR017930Myb domain
SMARTSM007172.4E-857105IPR001005SANT/Myb domain
PfamPF002495.9E-959100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1960105IPR009057Homeodomain-like
CDDcd001674.74E-760100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKKGKWSRE EDDLMRRHIV KYGVGRSWQA LAETLGLQRC GRSCRARWLN YLRPGLKHGN  60
FTPAEESIIC EMYSKRGSCW SVIAAQLPGR TDLAVKNYWN GTISKRHRPS SSTTSDATKP  120
EELALVVHDE ESSTTGSPCH AAGSFVVAPV LAGSSTPVQG QPPLAVGGCN AAKEEVGETV  180
PVERKPAMAP APLPENAPAP PGDEASAMDM VCAPMSRIPQ ASMEPDDMPL IDGFDEIDSF  240
LPWFDDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-21210625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72262.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180097.11e-115transcription factor MYB23-like
TrEMBLM0YS590.0M0YS59_HORVV; Uncharacterized protein
STRINGMLOC_72262.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.15e-42myb domain protein 87