PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72275.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 251aa    MW: 26269.4 Da    PI: 9.582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72275.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-1386130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
     MLOC_72275.1  86 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 130
                      6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.952129IPR017884SANT domain
CDDcd001670.0031225No hitNo description
PROSITE profilePS5129416.60579135IPR017930Myb domain
SuperFamilySSF466891.5E-1681136IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1783133IPR006447Myb domain, plants
SMARTSM007179.3E-1183133IPR001005SANT/Myb domain
PfamPF002492.6E-1186130IPR001005SANT/Myb domain
CDDcd001671.70E-1086131No hitNo description
Gene3DG3DSA:1.10.10.607.4E-1186129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MWDKIADAVE GKSPEEVRRH YELLVEDVDG IEAGRVPLLV YAGDGEEGGS GGGGGGGKKS  60
SGGGGGSHGE KGSSKSAEQE RRKGIAWTED EHRLFLLGLE KYGKGDWRSI SRNFVISRTP  120
TQVASHAQKY FIRLNSMNRE RRRSSIHDIT SVNGEASAAQ GPITGTNGQA AVPGKSPKQS  180
PHQPGSLPPG VDAFGTTIGQ PVGGPLVSAV GTPVTLPVAA PPHMGYAMHA PVPGTVVPRA  240
PMYPMPPPQS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15563GGKKSSGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72275.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669320.0AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726190.0AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192024.11e-141transcription factor SRM1-like
SwissprotQ9FNN62e-85SRM1_ARATH; Transcription factor SRM1
TrEMBLF2DSR41e-179F2DSR4_HORVV; Predicted protein (Fragment)
STRINGMLOC_72275.21e-144(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-79MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]