PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72502.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 620aa    MW: 65041.1 Da    PI: 6.3412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72502.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.37.8e-912616192374
          GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                   v++L e+A++ ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + ++ +p ++++++++ +l a+k+fsevsP+l+f+h
  MLOC_72502.1 261 VDQLAEAAKFAEAGDAFGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP----TGETPAPPASTPYDVVLKLGAYKAFSEVSPVLQFAH 353
                   689*************************999455566******************99....7888889999999*********************** PP

          GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   lt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+R +++  l++T+++sp+s++  el+ ++e+L++fA+elgv f+f+v+   ++++l++ 
  MLOC_72502.1 354 LTCVQAVLDELRGAGCIHVLDFDIGMGEQWASLMQELAQR-RPATALKVTALVSPSSHHPLELQLIHENLSSFAAELGVFFQFTVF---NIDTLDPA 446
                   ***************************************9.7889****************************************9...99999999 PP

          GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   eL     g+alaV+l +   +          + ++vL+lvksl +kvvv v++ +d+++ +F++++++a++  + l++s++a  +++ ++++k+Er+
  MLOC_72502.1 447 ELVAIAgGDALAVHLPVGAAHAA--------AMPAVLRLVKSLGAKVVVSVDRGCDRTELPFAAHLFQAFQSTVFLLESVDAV-GTDPDTASKIERF 534
                   9965555**********999997........4566*********************************************988.7888********* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                   l++++++++v  ++++    ++    Wr+ + +aGF+pv+ s++a++qa++ll+kv+++g+rve++  gsl+l+W++ +LvsvSaWr
  MLOC_72502.1 535 LVQPAVEQCVVGRHRA--SIEKAPLPWRAVFASAGFTPVQASTFAESQAESLLHKVPVRGFRVEKHaPGSLCLYWQRAELVSVSAWR 619
                   **********987777..55556699**************************************87478999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.965234598IPR005202Transcription factor GRAS
PfamPF035142.7E-88261619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MRGMPFAAEG HAGRLQQPKL SGGFWAEPTS VLDRRHSPSP SPPSSASTLS SEVASLVGGG  60
DAKNASPPPP QTWPAGEEVG AAAGVKEEWA HQLAPLDMGL GAGEGWDGTA PSGLAGPDST  120
FLRWIIGGGE DASAGMAGVM DPPALELDHT TSMMSPPTAS LGPSLSPFAP AMEDAKVGPF  180
GHAPSFLLHQ HQHHPQPHAA FFGAHPSFES APPPPKRHHP MAGAPAPKLP GFQGHLAPAG  240
GFFPALKPKA GAANDEVAAT VDQLAEAAKF AEAGDAFGAR EILARLNYRL PAAPAAGTPL  300
LRSAFYFKEA LRLALSPTGE TPAPPASTPY DVVLKLGAYK AFSEVSPVLQ FAHLTCVQAV  360
LDELRGAGCI HVLDFDIGMG EQWASLMQEL AQRRPATALK VTALVSPSSH HPLELQLIHE  420
NLSSFAAELG VFFQFTVFNI DTLDPAELVA IAGGDALAVH LPVGAAHAAA MPAVLRLVKS  480
LGAKVVVSVD RGCDRTELPF AAHLFQAFQS TVFLLESVDA VGTDPDTASK IERFLVQPAV  540
EQCVVGRHRA SIEKAPLPWR AVFASAGFTP VQASTFAESQ AESLLHKVPV RGFRVEKHAP  600
GSLCLYWQRA ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2729261932375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3608190.0AK360819.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1125M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLM0YST50.0M0YST5_HORVV; Uncharacterized protein
STRINGMLOC_72502.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-82GRAS family protein