PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7255.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 408aa    MW: 43809.3 Da    PI: 4.2089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7255.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1954103255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  MLOC_7255.1  54 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 103
                  789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-2953110No hitNo description
SuperFamilySSF541713.53E-1954111IPR016177DNA-binding domain
SMARTSM003804.6E-3554117IPR001471AP2/ERF domain
PROSITE profilePS5103219.55954111IPR001471AP2/ERF domain
PfamPF008471.0E-1354103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2754110IPR001471AP2/ERF domain
PRINTSPR003676.0E-85566IPR001471AP2/ERF domain
PRINTSPR003676.0E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVPSMARKRK ASDDASDADI DVGIPLSLAS TDAWTTSTVA AATAARQQQR GRKRFVGVRQ  60
RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGANTRTNF WPRPSPPAAL  120
QPPPAMLSMQ APALPSKVSN LLLLRLKARN QQLLRDDAAA PQEAALLQQH MSSSTSSCQE  180
SYVHGRERDD EYCFQVDDFL SDECNNSPEM EEEEEEVEEE EEEEEEMDFQ FMDKSAAAGD  240
EDAGLCSPFE MVAAELGGSA PVEANDADGE PATAVQEAMR RMDYERKVSA SLYALSGVSE  300
CLRMRLGGGG ASAARDQLTG LREACRKKQR VAVQQPASEQ SSEPAAAAGA DHDAEDGKAS  360
VQEECSGSSS SGLTEAGSSP SPEAANGGSD GDVLLWSSLD LAPICYMA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-103CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171738.10.0uncharacterized protein LOC109757323
TrEMBLA0A287QIK40.0A0A287QIK4_HORVV; Uncharacterized protein
STRINGMLOC_7255.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11