PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72586.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 387aa    MW: 41825.6 Da    PI: 4.8324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72586.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32178235260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   dDgynWrKYGqK++kgse+prsYY+C++agCp+kkkve++  d++v+ei+Y+g+Hnh+k
  MLOC_72586.3 178 DDGYNWRKYGQKQMKGSENPRSYYKCSFAGCPTKKKVEQAP-DGQVTEIVYKGTHNHPK 235
                   8****************************************.***************85 PP
2WRKY376.5e-12344365122
                   ---SS-EEEEEEE--TT-SS-E CS
          WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                   ldDgy+WrKYGqK+vkg+++pr
  MLOC_72586.3 344 LDDGYRWRKYGQKVVKGNPNPR 365
                   59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28169236IPR003657WRKY domain
PROSITE profilePS5081123.594172236IPR003657WRKY domain
SuperFamilySSF1182909.29E-25172236IPR003657WRKY domain
SMARTSM007741.4E-34177235IPR003657WRKY domain
PfamPF031061.2E-25178234IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-14329366IPR003657WRKY domain
SuperFamilySSF1182905.23E-10336366IPR003657WRKY domain
PROSITE profilePS5081115.789339375IPR003657WRKY domain
SMARTSM007745.6E-6344383IPR003657WRKY domain
PfamPF031062.7E-7345366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAMTPPSSFP PASPSSYFNM SSGFLDSPVL LTPSLFASPT TGAFPSHQFN WMGTPENEGL  60
QGSTTNQDEQ QQYSGFTFQT TAPPPVATTT ASSFLQSSMP MAQLVGDSYP QQQPWSYEDT  120
GMNGSTRPAE FTTQFEPPTT STIMATTAPD VLGNGAYSVP VSSGTAAYRV QSRRPSSDDG  180
YNWRKYGQKQ MKGSENPRSY YKCSFAGCPT KKKVEQAPDG QVTEIVYKGT HNHPKPQNPR  240
RGSGSAASSS YALQYQGSND VSSDALSGTP ENSSASYGED ETNGVSSRLA GAVSGGEDQF  300
DSEEPDSKRW RNDGDGEGTI MAVGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG  360
NPNPRYVRTA VSSTSLPSVF STFLVDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-15162236277Probable WRKY transcription factor 4
2lex_A4e-15162236277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72586.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764820.0AK376482.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3125H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151292.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-109WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A287G4740.0A0A287G474_HORVV; Uncharacterized protein
STRINGMLOC_72586.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-59WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]