PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72623.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 270aa MW: 28850 Da PI: 10.0634

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72623.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	240	263	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++ Fs+ L H ++ H MLOC_72623.1 240 HVCNSCNRAFSSLKGLDDHSKMkH 263 79*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.203	240	263	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	263	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MAIPLDFNTD ANKNNEIAHD ANKLIAPRPA DAPSSIPEAT VEETNTPGKQ KADDKGKANA 60 QNPIDGADNE SSDQDVDYLR KKTKDDYNPM ETPLNTPQGK RAKIATPTTG NKTGYVHVAT 120 PHPAAKQACK SVDHVHVVTP HPAVKQARKS GDRVHVVTPH PAAKQSHKSG DHVHVATPHP 180 AAKQARKSGD HFHVATPHPA AKQARKSGDH VHVATPHPAA KHARKTPENS DDKSKQSAGH 240 VCNSCNRAFS SLKGLDDHSK MKHGVASKVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72623.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU348776	0.0	EU348776.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163793.1	1e-147	histone deacetylase HDT3-like
TrEMBL	C1IC98	0.0	C1IC98_HORVU; Histone deacetylase HD2 isoform 2
TrEMBL	M0YT58	0.0	M0YT58_HORVV; Uncharacterized protein
STRING	MLOC_72623.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-07	histone deacetylase 2C

Publications ? help Back to Top
Demetriou K, et al. Epigenetic chromatin modifiers in barley: I. Cloning, mapping and expression analysis of the plant specific HD2 family of histone deacetylases from barley, during seed development and after hormonal treatment. Physiol Plant, 2009. 136(3): p. 358-68 [PMID:19470089]