PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72623.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 213aa    MW: 22790.3 Da    PI: 9.14
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72623.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035183206123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ C++ Fs+   L  H ++ H
  MLOC_72623.3 183 HVCNSCNRAFSSLKGLDDHSKMkH 206
                   79*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203183206IPR007087Zinc finger, C2H2
PROSITE patternPS000280185206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAIPLDFNTD ANKNNEIAHD ANKLIAPRPA DAPSSIPEAT VEETNTPGKQ KADDKGKANA  60
QNPIDGADNE SSDQDVDYLR KKTKDDYNPM ETPLNTPQGK RAKIATPTTG NKTGYVHVAT  120
PHPAAKQACK SVDHVHVVTP HPAVKQARKS GDHVHVATPH PAAKHARKTP ENSDDKSKQS  180
AGHVCNSCNR AFSSLKGLDD HSKMKHGVAS KVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72623.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3487760.0EU348776.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163793.11e-92histone deacetylase HDT3-like
TrEMBLC1IC981e-137C1IC98_HORVU; Histone deacetylase HD2 isoform 2
TrEMBLM0YT581e-139M0YT58_HORVV; Uncharacterized protein
STRINGMLOC_72623.21e-138(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-08histone deacetylase 2C