PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72641.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YC

Protein Properties

Length: 371aa MW: 39090.2 Da PI: 4.4599

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72641.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56	8.9e-18	240	327	12	98
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivpr 98 +++ +++lPl r+k+i+++d +vk+++aea l++ a elf+ l+ + a + rrt++ + + aav + dfl+d p MLOC_72641.1 240 AEAQPLQTALPLGRVKRIMRVDSEVKKVTAEASLLIAAATELFLGTLAAGAHTAASQGGRRTVRAAHVRAAVRAhRPTADFLLDCLPA 327 444455899************************************************************97515699***9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.1E-20	244	312	IPR009072	Histone-fold
SuperFamily	SSF47113	1.36E-15	246	328	IPR009072	Histone-fold
Pfam	PF00808	2.9E-14	248	311	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MGLKESHWPM GFCMTKKRAN KCWAFAATPA RPLHQPNEVS SGAARPLRRR RKSPSRGKIS 60 QAPRHFAPLP KSKHHPHQDL PNPSPLAMAT VAAAAPEHIE AMEQVEGEER AAGDAAAATD 120 DVDVPTEAMK QVDGDEAAAT AAADDDADEA MEEVGGDEAA ATTAAPDDDA AEPMEEGEGE 180 KAAGIDAEEE TAEIDAEEEA AEIDAEEEAD ASAEAHMEAS EQVDEEEREE VHAVAEEEEA 240 EAQPLQTALP LGRVKRIMRV DSEVKKVTAE ASLLIAAATE LFLGTLAAGA HTAASQGGRR 300 TVRAAHVRAA VRAHRPTADF LLDCLPAAAE AAPRVARSGS DGAAAAVAEA AVRKPLPRGT 360 RRIDGFFQKV T

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MGLKESHWPM GFCMTKKRAN KCWAFAATPA RPLHQPNEVS SGAARPLRRR RKSPSRGKIS  60
QAPRHFAPLP KSKHHPHQDL PNPSPLAMAT VAAAAPEHIE AMEQVEGEER AAGDAAAATD  120
DVDVPTEAMK QVDGDEAAAT AAADDDADEA MEEVGGDEAA ATTAAPDDDA AEPMEEGEGE  180
KAAGIDAEEE TAEIDAEEEA AEIDAEEEAD ASAEAHMEAS EQVDEEEREE VHAVAEEEEA  240
EAQPLQTALP LGRVKRIMRV DSEVKKVTAE ASLLIAAATE LFLGTLAAGA HTAASQGGRR  300
TVRAAHVRAA VRAHRPTADF LLDCLPAAAE AAPRVARSGS DGAAAAVAEA AVRKPLPRGT  360
RRIDGFFQKV T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72641.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373759	0.0	AK373759.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3043A13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153874.1	2e-65	nuclear transcription factor Y subunit C-6
TrEMBL	A0A287KDD9	0.0	A0A287KDD9_HORVV; Uncharacterized protein
STRING	MLOC_72641.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28