PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72737.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 217aa MW: 24441.8 Da PI: 9.4137

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72737.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3e-54	17	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrFhPtdee+++ yL++kv + +e+ ++i evd++k ePw+Lpkk+k +++ewyf++++d+ky+tg r+nratk gyWkatgkdke+++ MLOC_72737.1 17 LPPGFRFHPTDEEIITSYLAPKVLNPAFEA-TAIGEVDMNKNEPWELPKKAKMGQNEWYFYCQKDRKYPTGIRTNRATKVGYWKATGKDKEIFNPhc 112 79************************99.88***********99999*************************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ l+g+kktLvfykgrap+gekt+Wvmheyrle MLOC_72737.1 113 TSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 146 8888**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-59	9	180	IPR003441	NAC domain
PROSITE profile	PS51005	56.776	17	180	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAGHLQVQQQ QQQQLELPPG FRFHPTDEEI ITSYLAPKVL NPAFEATAIG EVDMNKNEPW 60 ELPKKAKMGQ NEWYFYCQKD RKYPTGIRTN RATKVGYWKA TGKDKEIFNP HCTSMLIGMK 120 KTLVFYKGRA PSGEKTNWVM HEYRLEISKQ STSGLPTSIA NAAAINMSSK EYVVCRIFQK 180 NTGSGPSSMV SYEDVGTGPS NNDQSNRGAT DGMLKYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-50	4	184	3	169	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-50	4	184	3	169	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-50	4	184	3	169	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-50	4	184	3	169	NO APICAL MERISTEM PROTEIN
4dul_A	7e-50	4	184	3	169	NAC domain-containing protein 19
4dul_B	7e-50	4	184	3	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72737.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819764	0.0	FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191194.1	1e-131	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	2e-78	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	F6IAY3	1e-163	F6IAY3_HORVV; NAC transcription factor
STRING	MLOC_72737.1	1e-164	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	2e-77	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]