PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72809.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YC
Protein Properties Length: 105aa    MW: 11787.7 Da    PI: 9.7909
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72809.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC62.96.1e-206851897
         NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                  ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r+++ + e+  +t+  s +++++ + d++dfl ++  
  MLOC_72809.3  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITIEKGVKTVSSSHLKQCIHSYDVYDFLKNVAS 85
                  5789***********************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-26372IPR009072Histone-fold
SuperFamilySSF471131.73E-21487IPR009072Histone-fold
PfamPF008084.5E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITIEKGVK  60
TVSSSHLKQC IHSYDVYDFL KNVASKVPDL GAPDSNADDK LGKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-24272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72809.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505931e-176AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194314.18e-69dr1-associated corepressor homolog isoform X1
TrEMBLA0A287G2912e-69A0A287G291_HORVV; Uncharacterized protein
STRINGMLOC_72809.22e-70(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-51nuclear factor Y, subunit C11