PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73122.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 182aa    MW: 20701.8 Da    PI: 9.7296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73122.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-153882347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
     MLOC_73122.1 38 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 82
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-113585IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-173687IPR009057Homeodomain-like
PROSITE profilePS5129415.4363787IPR017930Myb domain
TIGRFAMsTIGR015573.7E-183786IPR006447Myb domain, plants
CDDcd001673.40E-113883No hitNo description
PfamPF002497.2E-133882IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-123881IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQREIYMRIF FFHLQLFDAY IICCHSVNSI YCNYAAVPWT EEEHRTFLAG LEKLGKGDWR  60
GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMASDLSPAP NCPILPPTMA  120
KFHDMVTMTN QLQNSSLEGV SSSNPANLAK QVTRDLPPPV PSFTATNVDT SLTKMNHMSL  180
LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666490.0AK366649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193361.11e-102transcription factor SRM1-like isoform X2
TrEMBLM0YUH71e-132M0YUH7_HORVV; Uncharacterized protein
STRINGMLOC_73122.21e-132(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-35MYB_related family protein