PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_73122.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

MYB_related

Protein Properties

Length: 140aa MW: 16169.7 Da PI: 9.5232

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_73122.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.7e-15	38	82	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky MLOC_73122.4 38 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 82 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.1E-11	35	85	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-17	36	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.436	37	87	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-18	37	86	IPR006447	Myb domain, plants
CDD	cd00167	2.19E-11	38	83	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.5E-13	38	81	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-13	38	82	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MQREIYMRIF FFHLQLFDAY IICCHSVNSI YCNYAAVPWT EEEHRTFLAG LEKLGKGDWR 60 GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMASDLSPAP NCPILPPTMA 120 KFHDMVTMTN QLQNSSLVSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_73122.4

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366649	1e-172	AK366649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193360.1	3e-70	uncharacterized protein LOC109779160 isoform X1
Refseq	XP_020193361.1	3e-71	transcription factor SRM1-like isoform X2
Swissprot	B8BI93	1e-36	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	1e-36	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	M0YUH7	1e-100	M0YUH7_HORVV; Uncharacterized protein
STRING	MLOC_73122.2	1e-101	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-36	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]