PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73144.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 1077aa    MW: 120651 Da    PI: 6.7655
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73144.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-2281182199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  MLOC_73144.1  81 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RDEKQQ 174
                   99******************************9999986.*************************************************..568888 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  MLOC_73144.1 175 LLLGIRRA 182
                   9****997 PP
2Auxin_resp114.97e-38207290183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  MLOC_73144.1 207 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 290
                   799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-4170210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-3973196IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-1880172No hitNo description
SMARTSM010191.1E-2181183IPR003340B3 DNA binding domain
PfamPF023623.3E-2081182IPR003340B3 DNA binding domain
PROSITE profilePS5086311.44881183IPR003340B3 DNA binding domain
PfamPF065076.6E-33207290IPR010525Auxin response factor
PfamPF023093.7E-89411029IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479441028IPR000270PB1 domain
SuperFamilySSF542772.65E-69581023No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MSSAQRHFAS NLTAWLPILF DMVRPRSRIL RRCCFLIFQA DPDTDEVYAQ MTLQPVNTYA  60
KEALQLSELA LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE  120
LQARDIHDNV WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR  180
RANRQPTNIS SSVLSSDSMH IGVLAAAAHA SANTSPFTIF YNPRASPTEF VIPFAKYQKA  240
MYSNQISLGM RFRMMCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE  300
RRNRVSIWEI EPLAAPFFIC PQPFFGVKRP RQLDDESLEM ENLFKRAMPW LGEEVCIKDP  360
QTQSATMPGL SLVQWMNMNR QQSSSLASTS MQSEYLRSAS NPAMQNIGAA DLARQLYMQN  420
HILQQNSMQF NPPKLHQQMK PINDLSNAAL PLNQLGAIRN HQDQKQDQQR QQQSSIQAIP  480
LSQAQAQTNI VQAQVILQNQ MQQQKQPPPS PTQNQHGASG QHLLQSHQLQ DQNLQMQQQQ  540
LLLHQQLQQQ QQQQLNKLPG QLANLASQQT QLSDQELHLQ LLQKLQQQSL MSQSAVTLSR  600
LPIIQEQQNF LVEMQQQLSN SHSLAQQQVM PQQDCRTSSL QTTQLPPPIQ QEQQQQKPSQ  660
KQVAPTYVSE AAFPQISSTS VIPKTGNTMI VPGAAQSALT EEIPSCSTSP STANGSHLAQ  720
PTIGRNEHCK ISTEKVPHST AQMSILTPIE AVSVTPVTTK ELPKLNNSVK SSAISSKLPN  780
VVSGLQNFMN NALPTDNLET ASSATSLWPS QSDGLLHQGF ATSNFNQHQM FKDELPDVEI  840
QGVDPSNSAL FGMNSDGPLG FPMETEGLLE NALDSVKYQN HFSTDDENNY RMQKDARQEI  900
STSMVSQSFG QSDMAFNSID SAINDGALMN RNSWPPAAPP QRMRTFTKVY KRGAVGRSID  960
IGRFSGYGEL NQALARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP WEEFVNCVKC  1020
IRILSPQEVQ KMSLDGDLGS NVLPNQACSS SDGGNTWKPR YDQNSGNPSI GPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-12536311113388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73144.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A287TIJ80.0A0A287TIJ8_HORVV; Auxin response factor
TrEMBLA0A287TIM90.0A0A287TIM9_HORVV; Auxin response factor
TrEMBLA0A287TJ050.0A0A287TJ05_HORVV; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-167auxin response factor 19