PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73144.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 410aa    MW: 45448.9 Da    PI: 8.9077
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73144.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-23133234199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  MLOC_73144.2 133 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RDEKQQ 226
                   99******************************9999986.*************************************************..568888 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  MLOC_73144.2 227 LLLGIRRA 234
                   9****997 PP
2Auxin_resp116.91.7e-38259342183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  MLOC_73144.2 259 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 342
                   799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-42122262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-40125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-19132224No hitNo description
SMARTSM010191.1E-21133235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448133235IPR003340B3 DNA binding domain
PfamPF023627.6E-21133234IPR003340B3 DNA binding domain
PfamPF065071.6E-33259342IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAQSPASSAV VGASAPSEGE RKAPAINGEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA  60
ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE  120
LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD  180
NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN  240
ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL  300
GMRFRMMCET EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGFMNTIQ VLAVATVFFI  360
HFSFSFTDLI LSDRLGGTSR LQEKGGTEYQ SGRSNRLLLP FSYVHSHFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621934345368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73144.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0YUJ90.0M0YUJ9_HORVV; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.21e-164ARF family protein