PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73208.9
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 52aa    MW: 5763.54 Da    PI: 11.3959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73208.9genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.9e-111952340
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40
                   +GVr+++ +gr++AeIrdp    k++ ++lg+f++ae
  MLOC_73208.9 19 SRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAE 52
                  69******.7*********83...36*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.9591852IPR001471AP2/ERF domain
SMARTSM003803.4E-41852IPR001471AP2/ERF domain
PfamPF008471.0E-51852IPR001471AP2/ERF domain
PRINTSPR003678.7E-51930IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-101952IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-142052IPR001471AP2/ERF domain
PRINTSPR003678.7E-54152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006897Biological Processendocytosis
GO:0032956Biological Processregulation of actin cytoskeleton organization
GO:0051260Biological Processprotein homooligomerization
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0043231Cellular Componentintracellular membrane-bounded organelle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MRRARPPAGP GLEGDEVKSR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73208.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650353e-79AK365035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H02.
GenBankJN6811933e-79JN681193.1 Hordeum vulgare subsp. vulgare ethylene responsive transcription factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149829.12e-24ethylene-responsive transcription factor 3-like
SwissprotQ9SXS86e-11ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLF2DMB78e-27F2DMB7_HORVV; Ethylene responsive transcription factor 4
STRINGSb10g028110.18e-17(Sorghum bicolor)
STRINGGRMZM2G052720_P019e-17(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-15erf domain protein 9