PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73241.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 81aa    MW: 8530.23 Da    PI: 7.0127
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73241.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.71.6e-292576358
   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                  ++rY+eCl+NhAa+ GghavDGCgEfmps    g  + l CaACgCHR+FHRr+  
  MLOC_73241.1 25 QARYRECLRNHAAAQGGHAVDGCGEFMPS----GANDLLSCAACGCHRSFHRRDDG 76
                  689*************************9....6679****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-171874IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-252674IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-252774IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8892874IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MEFTGPEHAA GTRAPSDASS GNSGQARYRE CLRNHAAAQG GHAVDGCGEF MPSGANDLLS  60
CAACGCHRSF HRRDDGQQQP R
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154848.12e-44zinc-finger homeodomain protein 6-like
SwissprotB8AX538e-22ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A287GQH83e-51A0A287GQH8_HORVV; Uncharacterized protein
STRINGMLOC_73241.19e-53(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-21mini zinc finger